By Erik D. Demaine, Martin L. Demaine, Sándor P. Fekete, Mashhood Ishaque, Eynat Rafalin (auth.), Max H. Garzon, Hao Yan (eds.)

ISBN-10: 3540779612

ISBN-13: 9783540779612

ISBN-10: 3540779620

ISBN-13: 9783540779629

Biomolecular/DNA computing is now good proven as an interdisciplinary box the place chemistry, laptop technological know-how, molecular biology, physics, and arithmetic come including the typical goal of primary medical figuring out of biology and chemistry and its purposes. This overseas assembly has been the leading discussion board the place scientists with diverse backgrounds and a typical concentration meet to offer their most modern effects and entertain visions of the longer term. during this culture, approximately a hundred contributors converged in Memphis, Tennessee to carry the thirteenth overseas assembly on DNA Computing in the course of June 4–8, 2007, less than the auspices of the foreign Society for Nanoscale technological know-how, Computation and Engineering (ISNSCE) and The college of Memphis. the decision for papers inspired submissions of unique, fresh, and promising experimental and theoretical ends up in the sector. the decision for Papers elicited a few sixty two submissions, virtually completely balanced one of the significant theoretical and experimental different types. it truly is proof of ways good the interdisciplinary nature of the convention has actually matured that the key criterion of caliber, agreed upon upfront by way of this system Committee (PC), produced an almost balanced software besides around the significant different types, complete papers and talks with an summary simply. this system with the best perceived effect consisted of 24 papers for plenary oral talks; furthermore, 15 full-paper posters and 10 poster abstracts have been authorised, of which five authors have been invited to provide 5 brief demos in a brand new submission type this yr. The convention application retained the constitution now commonly used for this meeting.

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Additional info for DNA Computing: 13th International Meeting on DNA Computing, DNA13, Memphis, TN, USA, June 4-8, 2007, Revised Selected Papers

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7 Computing Using dlad Only We now consider a (theoretical) solution to the HPP problem through the gene assembly using only dlad operation. Consider a directed graph G = (V, E) with V = {p1 , · · · , pn }, n > 0 and the hamiltonian path problem in G = ext(G, p1 , pn ) from b to e. dlad is associated to G if it is of the form We say that a descriptor ψG ⎛ ⎞ dlad ψG = gb,p1 ⎝ gp,q ⎠ (r, x)|E| , where gp,q = (p, q)(x, y) (p,q)∈E∪{(pn ,e)} is a descriptor encoding an edge (p, q); we may choose any order of encoding dlad .

X0 x ? 1 x x 0 x x x1 x x0 x *1 x x *0 x x 1 x x x 0 ? ? 0 ! *0 1 ! *1 0 ! *0 1 ! 1 0 ! 0 1 ! 1 0 ! 0 1 ! 1 0 ! ! 0 31 x1 (a) x0 0 1 1 0 *0 0 0 0 0 1 1 0 *0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 (b) ? x0 0 x x0 0 x x0 0 x x0 0 x x0 0 x x1 1 x x1 1 x x *0 0 ? 0 0 ! 0 0 ! 0 0 ! 0 0 ! 0 0 ! 1 1 ! ! 1 1 (c) Fig. 3. There are 20 tiles in T? (a). The value in the middle of each tile t represents that tile’s v(t) value. Unlike the red tiles, the orange tiles do not have unique east-south binding domain pairs, and thus will attach nondeterministically.

In: Proceedings of DNA Computing: 6th International Workshop on DNA-Based Computers (DNA 2000), Leiden, The Netherlands, pp. 27–38 (June 2000) 5. : Solution of a 20-variable 3-SAT problem on a DNA computer. Science 296(5567), 499–502 (2002) 6. : On the computational power of DNA annealing and ligation. DNA Based Computers 199–221 (1996) 7. : Proofreading tile sets: Error correction for algorithmic self-assembly. In: Proceedings of the 43rd Annual IEEE Symposium on Foundations of Computer Science (FOCS 2002), Madison, WI, USA, June 2003, vol.

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DNA Computing: 13th International Meeting on DNA Computing, DNA13, Memphis, TN, USA, June 4-8, 2007, Revised Selected Papers by Erik D. Demaine, Martin L. Demaine, Sándor P. Fekete, Mashhood Ishaque, Eynat Rafalin (auth.), Max H. Garzon, Hao Yan (eds.)


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